![]() ![]() Install.packages("BiocManager") BiocManager::install("DESeq2")Īll commands run well, however, at the end of the installation the next problem related with GenomeInfoDbData pops up: The downloaded binary packages are inĬ:\Users\joser\AppData\Local\Temp\Rtmpw7QBW1\downloaded_packages I am running RStudio with R 4.2.1 in windows10 and I am trying to install the DEseq2 package using the recommended commands: if (!require("BiocManager", quietly = TRUE)) However, I have not been able to fix this issue with that information. * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.I know this is a post closely related with others posted here. * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/ggpubr’ĮRROR: dependency ‘ggpubr’ is not available for package ‘survminer’ * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/rstatix’ĮRROR: dependency ‘rstatix’ is not available for package ‘ggpubr’ * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/car’ĮRROR: dependency ‘car’ is not available for package ‘rstatix’ * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/rio’ĮRROR: dependency ‘rio’ is not available for package ‘car’ * removing ‘/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/openxlsx’ĮRROR: dependency ‘openxlsx’ is not available for package ‘rio’ namespaceImport -> loadNamespace -> library.dynam -> dyn.loadĮRROR: lazy loading failed for package ‘openxlsx’ Helper_functions.cpp:166:3: warning: this ‘for’ clause does not guard. Helper_functions.cpp: In function ‘SEXPREC* convert_to_excel_ref_expand(const std::vector&, const std::vector >&, const std::vector >&)’: G++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c helper_functions.cpp -o helper_functions.o G++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o ** package ‘openxlsx’ successfully unpacked and MD5 sums checked * installing *source* package ‘openxlsx’. However I still can not install packages.įor example when trying to install the 'survminer'-package I get this output: I did install the annobin package from bodhi and that removed the many, many error messages. Installing to /home/flo/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-openxlsx/00new/openxlsx/libs G++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o openxlsx.so RcppExports.o helper_functions.o load_workbook.o openxlsx_init.o read_workbook.o write_data.o write_file.o write_file_2.o -L/usr/lib64/R/lib -lR namespaceImport -> loadNamespace -> library.dynam -> dyn.load ![]() Libicui18n.so.63: cannot open shared object file: No such file or directoryĬalls. ![]() Unable to load shared object '/home/flo/R/x86_64-redhat-linux-gnu-library/3.6/stringi/libs/stringi.so': cpp: debugging: index = 853 max = 1919Įrror in dyn.load(file, DLLpath = DLLpath. cpp: ICE: Please contact the annobin maintainer with details of this problemĪnnobin. cpp: ICE: attempting to access a gcc command line option that is not stored in global_optionsĪnnobin. While the package compilation runs the R console shows many lines of:Īnnobin. I `dnf remove`d r and then ran `dnf autoremove`, but i still had a non-zero exit outcome. ![]() Version-Release number of selected component (if applicable):ĭoes not install ever. Installation of package '(.)' had a non-zero exit status. When trying to install several packages, namely 'car', 'rio', 'openxlsx' and 'survminer' the installation will fail with the warning: ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |